Use different IDs on the two links, and instantiate flowplayer twice, once for each unique ID i.e.:
<a href="" id="player1"></a>
<a href="" id="player2"></a>
flowplayer("player1", "flowplayer/flowplayer-3.2.15.swf",{clip:{autoPlay:false}});
flowplayer("player2", "flowplayer/flowplayer-3.2.15.swf",{clip:{autoPlay:false}});